Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2

Authors

Evan Bolyen, Northern Arizona University
Jai Ram Rideout, Northern Arizona University
Matthew Dillon, Northern Arizona University
Nicholas Bokulich, Northern Arizona UniversityFollow
Christian Abnet, National Cancer Institute
Gabriel Al-Ghalith, University of Minnesota
Harriet Alexander, Woods Hole Oceanographic Institution
Eric Alm, Massachusetts Institute of Technology
Manimozhiyan Arumugam, University of Copenhagen
Francesco Asnicar, University of Trento
Yang Bai, Chinese Academy of Sciences
Jordan Bisanz, University of California-San Francisco
Kyle Bittinger, Children's Hospital of Philadelphia
Asker Brejnrod, University of Copenhagen
Colin J. Brislawn, Pacific Northwest National LaboratoryFollow
C. Titus Brown, University of California-Davis
Benjamin Callahan, North Carolina State University
Mauricio Caraballo, University of California-San Diego
John Chase, Northern Arizona State University
Emily K. Cope, Northern Arizona University
Ricardo Da Silva, University of California-San Diego
Christian Diener, Institute for Systems Biology
Pieter Dorrenstein, University of California-San Diego
Gavin M. Douglas, Dalhousie University
Daniel M. Durall, University of British Columbia
Claire Duvallet, Massachusetts Institute of Technology
Christian Edwardson, John G. Shedd Aquarium
Madeleine Ernst, University of California-San Diego
Mehrbod Estaki, University of British Columbian Okanagan
Jennifer Fouquier, University of Colorado
Julia M. Gauglitz, University of California - San Diego
Sean Gibbons, Institute for Systems BiologyFollow
Deanna L. Gibson, University of British Columbia
Antonio Gonzalez, University of California - San DiegoFollow
Kestrel Gorlick, Northern Arizona University
Jiarong Guo, Michigan State University
Benjamin Hillmann, University of Minnesota
Susan Holmes, Stanford University
Hannes Holste, University of California - San Diego
Curtis Huttenhower, Harvard T.H. Chan School of Public Health
Gavin A. Huttley, Australian National University
Stefan Jessen, Universitat Giessen
Alan K. Jarmusch, University of California - San Diego
Lingjing Jiang, University of California - San DiegoFollow
Benjamin D. Kaehler, Australian National University
Kyo Bin Kang, Sookmyung Women's University
Christopher Keefe, Northern Arizona University
Paul Keim, Northern Arizona University
Scott T. Kelley, San Diego State University
Dan Knights, University of Minnesota - Minneapolis
Irina Koester, University of California - San Diego
Jorden Kreps, Northern Arizona University
Morgan G.I. Langille, Dalhousie University
Joslynn Lee, Howard Hughes Medical Institute
Ruth Ley, Max Planck Institute for Developmental Biology
Yong-Xin Liu, Chinese Academy of Sciences
Erikka Loftfield, Yale University
Catherine Lozupone, University of Colorado
Massoud Maher, University of California - San Diego
Clarisse Marotz, University of California - San Diego
Bryan Martin, University of Washington
Daniel McDonald, University of California - San DiegoFollow
Lauren J. McIver, Harvard T.H. Chan School of Public Health
Alexey Melnik, University of California - San Diego
Jessica L. Metcalf, Colorado State University
Sydney C. Morgan, University of British Columbia
Jamie T. Morton, University of California - San DiegoFollow
Ahmad Turan Naimey, Northern Arizona University
Jose Antonio Navas-Molina, University of California - San DiegoFollow
Louis Felix Nothias, University of California - San Diego
Stephanie Orchanian, University of California, Irvine
Talima Pearson, Northern Arizona University
Samuel L. Peoples, Syracuse University
Daniel Petras, Technische Universität Berlin
Mary Lai Preuss, Webster University
Elmar Pruesse, University of Colorado
Lasse Buur Rasmussen, University of Copenhagen
Adam Rivers, USDA Agricultural Research Service
Michael Robeson, University of Arkansas for Medical Sciences
Patrick Rosenthal, Webster University
Nicola Segata, University of Trento
Michael Shaffer, University of Colorado
Arron Shiffer, Northern Arizona University
Rashmi Sinha, National Cancer Institute
Se Jin Song, University of CaliforniaFollow
John R. Spear, Colorado School of Mines
Austin D. Swafford, University of California - San DiegoFollow
Luke R. Thompson, University of Southern MississippiFollow
Pedro J. Torres, San Diego State University
Pauline Trinh, University of Washington
Anupriya Tripathi, University of California - San DiegoFollow
Peter Turnbaugh, University of California, San Francisco
Sabah Ul-Hasan, University of California, Merced
Justin Van der Hooft, Wageningen University & Research
Fernando Vargas, University of California - San Diego
Yoshiki Vázquez-Baeza, University of California - San Diego
Emily Vogtmann, National Cancer Institute
Max Von Hippel, University of Arizona
William Walters, Max Planck Institute for Developmental Biology
Yunhu Wan, National Cancer Institute
Mingxun Wang, University of California - San Diego
Jonathan Warren, National Laboratory Service
Kyle C. Weber, USDA, Agricultural Research Service
Charles H.D. Williamson, Northern Arizona University
Amy Willis, University of Washington
Zhenjiang Zech Xu, University of California - San DiegoFollow
Yilong Zhang, Merck & Co. Inc.
Qiyun Zhu, University of California - San DiegoFollow
Rob Knight, University of California - San DiegoFollow
James Gregory Caporaso, Northern Arizona University

Document Type

Article

Publication Date

8-1-2019

Department

Coastal Sciences, Gulf Coast Research Laboratory

School

Ocean Science and Engineering

Comments

Author Correction

Publication Title

Nature Biotechnology

Volume

37

First Page

852

Last Page

857

Recommended Citation

Bolyen, E., Rideout, J. R., Dillon, M., Bokulich, N., Abnet, C., Al-Ghalith, G., Alexander, H., Alm, E., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C., Callahan, B., Caraballo, M., Chase, J., K., E., Da Silva, R., Diener, C., Dorrenstein, P., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Jessen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kreps, J., Langille, M. G., Lee, J., Ley, R., Liu, Y., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B., McDonald, D., McIver, L. J., Melnik, A., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P., Ul-Hasan, S., Van der Hooft, J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., Von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H., Willis, A., Xu, Z. Z., Zhang, Y., Zhu, Q., Knight, R., Caporaso, J. G. (2019). Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2. Nature Biotechnology, 37, 852-857.
Available at: https://aquila.usm.edu/fac_pubs/16578