Document Type

Article

Publication Date

4-13-2017

Department

Chemistry and Biochemistry

School

Mathematics and Natural Sciences

Abstract

Background

Nutrient deprivation causes significant stress to the unicellular microalga, Chlamydomonas reinhardtii, which responds by significantly altering its metabolic program. Following N deprivation, the accumulation of starch and triacylglycerols (TAGs) is significantly altered following massive reprogramming of cellular metabolism. One protein that was found to change dramatically and early to this stress was TAB2, a photosystem I (PSI) translation initiation factor, whose transcript and protein levels increased significantly after only 30 min of N deprivation. A detailed physiological and omics-based analysis of an insertional mutant of Chlamydomonas with reduced TAB2 function was conducted to determine what role the functional PSI plays in regulating the cellular response to N deprivation.

Results

The tab2 mutant displayed increased acetate assimilation and elevated starch levels during the first 6 h of N deprivation, followed by a shift toward altered amino acid synthesis, reduced TAG content and altered fatty acid profiles. These results suggested a central role for PSI in controlling cellular metabolism and its implication in regulation of lipid/starch partitioning. Time course analyses of the tab2 mutant versus wild type under N-deprived versus N replete conditions revealed changes in the ATP/NADPH ratio and suggested that TAG biosynthesis may be associated with maintaining the redox state of the cell during N deprivation. The loss of ability to accumulate TAG in the tab2mutant co-occurred with an up-regulation of photo-protective mechanisms, suggesting that the synthesis of TAG in the wild type occurs not only as a temporal energy sink, but also as a protective electron sink.

Conclusions

By exploiting the tab2 mutation in the cells of C. reinhardtii cultured under autotrophic, mixotrophic, and heterotrophic conditions during nitrogen replete growth and for the first 8 days of nitrogen deprivation, we showed that TAG accumulation and lipid/starch partitioning are dynamically regulated by alterations in PSI function, which concomitantly alters the immediate ATP/NADPH demand. This occurs even without removal of nitrogen from the medium, but sufficient external carbon must nevertheless be available. Efforts to increase lipid accumulation in algae such as Chlamydomonas need to consider carefully how the energy balance of the cell is involved in or affected by such efforts and that numerous layers of metabolic and genetic regulatory control are likely to interfere with such efforts to control oil biosynthesis. Such knowledge will enable synthetic biology approaches to alter the response to the N depletion stress, leading to rewiring of the regulatory networks so that lipid accumulation could be turned on in the absence of N deprivation, allowing for the development of algal production strains with highly enhanced lipid accumulation profiles.

Comments

Published by 'Biotechnology for Biofuels' at 10.1186/s13068-017-0774-4.

Publication Title

Biotechnology for Biofuels

Volume

10

Issue

89

First Page

1

Last Page

21

Additional file 1-Table S1.docx (17 kB)
The list of primers used for the quantitative real-time PCR results for the WT and <i>tab2</i>.

Additional file 2-Figure S1.pdf (43 kB)
<p>Key for visualization of protein expression levels via heat maps of chlorophyll and carotenoids biosynthesis. In heat maps protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em>tab2</em> at time 0 and <em>tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</p>

Additional file 3-Figure S2.pdf (16 kB)
<p><span class="SimplePara">Correlation diagram of TAG content/ Starch and Cell size area during N deprivation in the WT (A) and in <em class="EmphasisTypeItalic">tab2</em> (B), Correlation of starch content with cell area size is represented with solid triangles and dash line. Correlation of TAG content with cell area size is represented with solid circles.</span></p>

Additional file 5-Figure S4.pdf (54 kB)
<p><span class="SimplePara">Key for visualization of protein expression levels via heat maps of mitochondrial electron transport mechanisms. In the heat maps, protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</span></p>

Additional file 4-Figure S3.pdf (61 kB)
<p><span class="SimplePara">Key for visualization of protein expression levels via heat maps of photosystem complexes. In the heat maps, protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</span></p>

Additional file 6-Figure S5.pdf (167 kB)
The 77K Steady State Fluorescence Emission Spectra of C. reinhardtii WT Cells grown in TAP media during N deprivation. The amplitude of the PSII-associated signal (around 685 nm) and the PSI-associated signal (around 715 nm).

Additional file 7-Figure S6.pdf (33 kB)
<p><span class="SimplePara">Detailed Lipid analysis of the wild-type and <em class="EmphasisTypeItalic">tab2</em> in N+ conditions. (A) Changes in TAG content in the wild-type and <em class="EmphasisTypeItalic">tab2</em>. (B) Mol (%) of esterified fatty acids in TAG isolated from N+ condition cells in the Wild-type (C) and in <em class="EmphasisTypeItalic">tab2</em> (D). Time points presented are 0, 2, 4, 6 and 8 days. Values are representative of triplicate biological samples. Error bars indicate <em class="EmphasisTypeItalic">SE</em> means.</span></p>

Additional File 8-Figure S7.pdf (38 kB)
<p><span class="SimplePara">Visualization of protein expression levels for fatty acid biosynthesis. Heat maps compare protein expression levels relative to wild type time 0 (WT 0h), including WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation. The ratios are displayed in log2 scale.</span></p>

Additional file 9-Figure S8.pdf (48 kB)
<p><span class="SimplePara">Quantitative real-time PCR Results for WT and <em class="EmphasisTypeItalic">tab2</em>. The transcript level was represented by white bars for the WT and black bars for the mutant. Time points presented are 0.5, 2, 6, 24, 72 h.</span></p>

Additional file 10-Figure S9.pdf (43 kB)
<p><span class="SimplePara">Key for visualization of protein expression levels via heat maps of (A) gluconeogenesis and starch biosynthesis and (B) glycolysis and starch catabolism. In the heat maps, protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</span></p>

Additional file 11-Figure S10.pdf (49 kB)
<p><span class="SimplePara">Key for visualization of protein expression levels via heat maps of (A) acetate uptake and (B) central metabolism. In the heat maps, protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</span></p>

Additional file 12-Figure S11.pdf (41 kB)
<p><span class="SimplePara">Metabolic profiles of the WT and the <em class="EmphasisTypeItalic">tab2</em>. Time points presented are 0, 0.5, 2, 6, 24, 48, 72, 96, 120, 144 h. Data are normalized to the means' standard deviations. Circles correspond to the WT profile. Squares corresponded to the <em class="EmphasisTypeItalic">tab2</em> profile.</span></p>

Additional file 13-Figure S12.pdf (59 kB)
<p><span class="SimplePara">Key for visualization of protein expression levels via heat maps of amino acids and polyamines. In the heat maps, protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</span></p>

Additional file 14-Figure S13.pdf (29 kB)
<p><span class="SimplePara">Time-course amino acids profile during N deprivation in the WT and <em class="EmphasisTypeItalic">tab2</em>. Time points presented are 0, 0.5, 2, 6, 24, 48, 72, 96, 120, 144 h. Data are normalized to the means standard deviation. Squares corresponded to the WT profile. Circles corresponded to the <em class="EmphasisTypeItalic">tab2</em> profile.</span></p>

Additional file 15-Figure S14.pdf (275 kB)
<p><span class="SimplePara">Key for visualization of protein expression levels via heat maps of (A) ROS protection, (B) proteolysis and (C) OPPP. In the heat maps, protein expression levels of all conditions (WT at time 0, WT after 48 h of N deprivation, <em class="EmphasisTypeItalic">tab2</em> at time 0 and <em class="EmphasisTypeItalic">tab2</em> after 48 h of N deprivation) are compared. The shown mean ratios are log2.</span></p>

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