In Vivo Cloning of Up to 16 kb Plasmids in E. Coli is As Simple As PCR

Authors

Faqing Huang, University of Southern MississippiFollow
Joseph Rankin Spengler, University of Southern Mississippi
Allen Yang Huang, Oak Grove High School

Document Type

Article

Publication Date

8-24-2017

Department

Chemistry and Biochemistry

School

Mathematics and Natural Sciences

Abstract

The precise assembly of defined DNA sequences into plasmids is an essential task in bioscience research. While a number of molecular cloning techniques have been developed, many methods require specialized expensive reagents or laborious experimental procedure. Not surprisingly, conventional cloning techniques based on restriction digestion and ligation are still commonly used in routine DNA cloning. Here, we describe a simple, fast, and economical cloning method based on RecA- and RecET-independent in vivo recombination of DNA fragments with overlapping ends using E. coli. All DNA fragments were prepared by a 2-consecutive PCR procedure with Q5 DNA polymerase and used directly for transformation resulting in 95% cloning accuracy and zero background from parental template plasmids. Quantitative relationships were established between cloning efficiency and three factors–the length of overlapping nucleotides, the number of DNA fragments, and the size of target plasmids–which can provide general guidance for selecting in vivo cloning parameters. The method may be used to accurately assemble up to 5 DNA fragments with 25 nt overlapping ends into relatively small plasmids, and 3 DNA fragments into plasmids up to 16 kb in size. The whole cloning procedure may be completed within 2 days by a researcher with little training in cloning. The combination of high accuracy and zero background eliminates the need for screening a large number of colonies. The method requires no enzymes other than Q5 DNA polymerase, has no sequence restriction, is highly reliable, and represents one of the simplest, fastest, and cheapest cloning techniques available. Our method is particularly suitable for common cloning tasks in the lab where the primary goal is to quickly generate a plasmid with a pre-defined sequence at low costs.

Comments

Published by PLOS ONE at 10.1371/journal.pone.0183974.

Publication Title

PLoS ONE

Volume

12

Issue

8

First Page

1

Last Page

21

Recommended Citation

Huang, F., Spengler, J. R., Huang, A. Y. (2017). In Vivo Cloning of Up to 16 kb Plasmids in E. Coli is As Simple As PCR. PLoS ONE, 12(8), 1-21.
Available at: https://aquila.usm.edu/fac_pubs/16265