Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2

Authors

• Evan Bolyen, Northern Arizona University
• Jai Ram Rideout, Northern Arizona University
• Matthew Dillon, Northern Arizona University
• Nicholas Bokulich, Northern Arizona UniversityFollow
• Christian Abnet, National Cancer Institute
• Gabriel Al-Ghalith, University of Minnesota
• Harriet Alexander, Woods Hole Oceanographic Institution
• Eric Alm, Massachusetts Institute of Technology
• Manimozhiyan Arumugam, University of Copenhagen
• Francesco Asnicar, University of Trento
• Yang Bai, Chinese Academy of Sciences
• Jordan Bisanz, University of California-San Francisco
• Kyle Bittinger, Children's Hospital of Philadelphia
• Asker Brejnrod, University of Copenhagen
• Colin J. Brislawn, Pacific Northwest National LaboratoryFollow
• C. Titus Brown, University of California-Davis
• Benjamin Callahan, North Carolina State University
• Mauricio Caraballo, University of California-San Diego
• John Chase, Northern Arizona State University
• Emily K. Cope, Northern Arizona University
• Ricardo Da Silva, University of California-San Diego
• Christian Diener, Institute for Systems Biology
• Pieter Dorrenstein, University of California-San Diego
• Gavin M. Douglas, Dalhousie University
• Daniel M. Durall, University of British Columbia
• Claire Duvallet, Massachusetts Institute of Technology
• Christian Edwardson, John G. Shedd Aquarium
• Madeleine Ernst, University of California-San Diego
• Mehrbod Estaki, University of British Columbian Okanagan
• Jennifer Fouquier, University of Colorado
• Julia M. Gauglitz, University of California - San Diego
• Sean Gibbons, Institute for Systems BiologyFollow
• Deanna L. Gibson, University of British Columbia
• Antonio Gonzalez, University of California - San DiegoFollow
• Kestrel Gorlick, Northern Arizona University
• Jiarong Guo, Michigan State University
• Benjamin Hillmann, University of Minnesota
• Susan Holmes, Stanford University
• Hannes Holste, University of California - San Diego
• Curtis Huttenhower, Harvard T.H. Chan School of Public Health
• Gavin A. Huttley, Australian National University
• Stefan Jessen, Universitat Giessen
• Alan K. Jarmusch, University of California - San Diego
• Lingjing Jiang, University of California - San DiegoFollow
• Benjamin D. Kaehler, Australian National University
• Kyo Bin Kang, Sookmyung Women's University
• Christopher Keefe, Northern Arizona University
• Paul Keim, Northern Arizona University
• Scott T. Kelley, San Diego State University
• Dan Knights, University of Minnesota - Minneapolis
• Irina Koester, University of California - San Diego
• Jorden Kreps, Northern Arizona University
• Morgan G.I. Langille, Dalhousie University
• Joslynn Lee, Howard Hughes Medical Institute
• Ruth Ley, Max Planck Institute for Developmental Biology
• Yong-Xin Liu, Chinese Academy of Sciences
• Erikka Loftfield, Yale University
• Catherine Lozupone, University of Colorado
• Massoud Maher, University of California - San Diego
• Clarisse Marotz, University of California - San Diego
• Bryan Martin, University of Washington
• Daniel McDonald, University of California - San DiegoFollow
• Lauren J. McIver, Harvard T.H. Chan School of Public Health
• Alexey Melnik, University of California - San Diego
• Jessica L. Metcalf, Colorado State University
• Sydney C. Morgan, University of British Columbia
• Jamie T. Morton, University of California - San DiegoFollow
• Ahmad Turan Naimey, Northern Arizona University
• Jose Antonio Navas-Molina, University of California - San DiegoFollow
• Louis Felix Nothias, University of California - San Diego
• Stephanie Orchanian, University of California, Irvine
• Talima Pearson, Northern Arizona University
• Samuel L. Peoples, Syracuse University
• Daniel Petras, Technische Universität Berlin
• Mary Lai Preuss, Webster University
• Elmar Pruesse, University of Colorado
• Lasse Buur Rasmussen, University of Copenhagen
• Adam Rivers, USDA Agricultural Research Service
• Michael Robeson, University of Arkansas for Medical Sciences
• Patrick Rosenthal, Webster University
• Nicola Segata, University of Trento
• Michael Shaffer, University of Colorado
• Arron Shiffer, Northern Arizona University
• Rashmi Sinha, National Cancer Institute
• Se Jin Song, University of CaliforniaFollow
• John R. Spear, Colorado School of Mines
• Austin D. Swafford, University of California - San DiegoFollow
• Luke R. Thompson, University of Southern MississippiFollow
• Pedro J. Torres, San Diego State University
• Pauline Trinh, University of Washington
• Anupriya Tripathi, University of California - San DiegoFollow
• Peter Turnbaugh, University of California, San Francisco
• Sabah Ul-Hasan, University of California, Merced
• Justin Van der Hooft, Wageningen University & Research
• Fernando Vargas, University of California - San Diego
• Yoshiki Vázquez-Baeza, University of California - San Diego
• Emily Vogtmann, National Cancer Institute
• Max Von Hippel, University of Arizona
• William Walters, Max Planck Institute for Developmental Biology
• Yunhu Wan, National Cancer Institute
• Mingxun Wang, University of California - San Diego
• Jonathan Warren, National Laboratory Service
• Kyle C. Weber, USDA, Agricultural Research Service
• Charles H.D. Williamson, Northern Arizona University
• Amy Willis, University of Washington
• Zhenjiang Zech Xu, University of California - San DiegoFollow
• Yilong Zhang, Merck & Co. Inc.
• Qiyun Zhu, University of California - San DiegoFollow
• Rob Knight, University of California - San DiegoFollow
• James Gregory Caporaso, Northern Arizona University

Document Type

Article

Publication Date

8-1-2019

Department

Coastal Sciences, Gulf Coast Research Laboratory

School

Ocean Science and Engineering

Comments

Author Correction

Publication Title

Nature Biotechnology

Volume

37

First Page

852

Last Page

857

Recommended Citation

Bolyen, E., Rideout, J. R., Dillon, M., Bokulich, N., Abnet, C., Al-Ghalith, G., Alexander, H., Alm, E., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C., Callahan, B., Caraballo, M., Chase, J., K., E., Da Silva, R., Diener, C., Dorrenstein, P., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Jessen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kreps, J., Langille, M. G., Lee, J., Ley, R., Liu, Y., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B., McDonald, D., McIver, L. J., Melnik, A., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P., Ul-Hasan, S., Van der Hooft, J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., Von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H., Willis, A., Xu, Z. Z., Zhang, Y., Zhu, Q., Knight, R., Caporaso, J. G. (2019). Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2. Nature Biotechnology, 37, 852-857.
Available at: https://aquila.usm.edu/fac_pubs/16578