Document Type
Article
Publication Date
3-1-2023
Department
Biological Sciences
School
Biological, Environmental, and Earth Sciences
Abstract
The Gulf Coast tick, Amblyomma maculatum, inhabits the Southeastern states of the USA bordering the Gulf of Mexico, Mexico, and other Central and South American countries. More recently, its U.S. range has extended West to Arizona and Northeast to New York state and Connecticut. It is a vector of Rickettsia parkeri and Hepatozoon americanum. This tick species has become a model to study tick/Rickettsia interactions. To increase our knowledge of the basic biology of A. maculatum we report here a draft genome of this tick and an extensive functional classification of its proteome. The DNA from a single male tick was used as a genomic source, and a 10X genomics protocol determined 28,460 scaffolds having equal or more than 10 Kb, totaling 1.98 Gb. The N50 scaffold size was 19,849 Kb. The BRAKER pipeline was used to find the protein-coding gene boundaries on the assembled A. maculatum genome, discovering 237,921 CDS. After trimming and classifying the transposable elements, bacterial contaminants, and truncated genes, a set of 25,702 were annotated and classified as the core gene products. A BUSCO analysis revealed 83.4% complete BUSCOs. A hyperlinked spreadsheet is provided, allowing browsing of the individual gene products and their matches to several databases.
Publication Title
Ticks and Tick-Borne Diseases
Volume
14
Issue
2
Recommended Citation
Ribeiro, J. M.,
Bayona-Vásquez, N. J.,
Budachetri, K.,
Kumar, D.,
Frederick, J. C.,
Tahir, F.,
Faircloth, B. C.,
Glenn, T. C.,
Karim, S.
(2023). A Draft of the Genome of the Gulf Coast tick, Amblyomma maculatum. Ticks and Tick-Borne Diseases, 14(2).
Available at: https://aquila.usm.edu/fac_pubs/20511