A Parameterization Study of Short Read Assembly Using the Velvet Assembler
Document Type
Conference Proceeding
Publication Date
1-1-2012
Abstract
In this study, we examine approaches to the problem of assembling large, contiguous sections of genetic code from short reads generated from laboratory techniques. We explore the Eulerian Path approach in detail, utilizing a de Bruijn Graph, and demonstrate current software technologies and algorithms using a sample genome. We investigate the input parameters of Velvet and discuss their implications. © 2012 Springer-Verlag GmbH Berlin Heidelberg.
Publication Title
Advances in Intelligent and Soft Computing
Volume
132 AISC
First Page
179
Last Page
186
Recommended Citation
Elliot, A.,
Perkins, A.,
Yenduri, S.
(2012). A Parameterization Study of Short Read Assembly Using the Velvet Assembler. Advances in Intelligent and Soft Computing, 132 AISC, 179-186.
Available at: https://aquila.usm.edu/fac_pubs/20983
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